KABUL: A US air strike on a hospital in the Afghan city of Kunduz on Saturday left nine Médecins Sans Frontières (MSF) staff dead, in a bombardment the charity said continued for more than 30 minutes after Washington was informed.

Dozens of others were seriously wounded at the facility, a key medical lifeline that has been running "beyond capacity" during recent fighting that saw the Taliban seize control of the northern provincial capital of Kunduz for several days.

The strike early Saturday left the building engulfed in flames, with photos posted on Twitter by Doctors Without Borders showing shocked and dazed staff in the aftermath of the bombing.

"At 2:10 am, the MSF trauma centre in Kunduz was hit several times during sustained bombing and was very badly damaged," the organisation, known by its French initials, said in a statement.

"It is with deep sadness that we confirm so far the death of nine MSF staff during the bombing, 37 people were seriously wounded. There are many patients and staff who remain unaccounted for."

It said the bombing continued for more than 30 minutes after American and Afghan military officials in Kabul and Washington were first informed.

"All parties to the conflict, including in Kabul and Washington, were clearly informed of the precise location (GPS coordinates) of the MSF facilities," the statement added.

The Afghan defence ministry expressed sadness over the incident but in a statement claimed that "a group of terrorists armed with light and heavy weapons were using the hospital building as a position to target Afghan forces and civilians."

Nato conceded that US forces may have been behind the strike but has not so far commented on MSF's specific claims.

"US forces conducted an air strike in Kunduz city at 2:15 am against individuals threatening the force," a Nato statement said.

"The strike may have resulted in collateral damage to a nearby medical facility. This incident is under investigation."

Civilian and military casualties caused by Nato forces have been one of the most contentious issues in the 14-year campaign against Taliban insurgents, provoking harsh public and government criticism.

Saturday's bombing came after Taliban insurgents overran the northern Afghan city on Monday. It was the first major city to be captured by militants since 2001.

Read: 'Northern Afghan city of Kunduz collapses into hands of Taliban'

MSF said some 105 patients and their caregivers, as well as more than 80 international and local MSF staff were in the hospital at the time of the bombing.

'Shocked, emotional, in tears'

The destroyed MSF building was filled with the smell of burning flesh and some bodies were charred beyond recognition, said Qiamudeen, a 31-year-old shopkeeper whose neighbour was killed in the strike.

"I was shocked, emotional and in tears when I reached the hospital," Qiamudeen, who goes by one name, told AFP.

"I had to get permission from Taliban insurgents blocking several parts of the city, desperately pleading with them to let me go to the hospital as my neighbour had been killed."

Another resident said he was anxiously trying to contact six of his friends, all doctors and nurses at MSF, but their cellphones were unreachable.

"I don't have any news from them and they may have been killed," he told AFP.

He said many people with wounded relatives at the facility were too afraid to leave their homes to check on them amid erratic fire fights between troops and Taliban snipers lurking in the city.

The Afghan government insists the city is firmly in their control.

'Appalling tragedy'

The MSF trauma centre in Kunduz is the only medical facility in the whole northeastern region of Afghanistan that can deal with major injuries.

"We are deeply shocked by the attack, the killing of our staff and the heavy toll it has inflicted on healthcare in Kunduz," MSF director of operations Bart Janssens said in a statement.

"We do not yet have the final casualty figures, but our medical team are providing first aid and treating the injured patients. We urge all parties to respect the safety of health facilities and staff."

Kunduz is facing a humanitarian crisis, with thousands of civilians caught in the crossfire between government forces and insurgents.

Precise losses in the fighting were not known, but health authorities said on Friday that at least 60 people have been killed and 400 wounded.

"This is an appalling tragedy," the International Committee of the Red Cross said about Saturday's strike.

"Such attacks against health workers and facilities undermine the capacity of humanitarian organisations to assist the Afghan people at a time when they most urgently need it."

As fighting spreads in neighbouring Badakhshan, Takhar and Baghlan provinces, concerns are mounting that the seizure of Kunduz was merely the opening gambit in a new, bolder Taliban strategy to tighten the insurgency's grip across northern Afghanistan.

The Taliban's offensive in Kunduz, their biggest tactical success since 2001, marks a major blow for Afghanistan's Western-trained forces, who have largely been fighting on their own since last December.

In a statement, the Taliban accused "barbaric American forces" of deliberately carrying out Saturday's strike, which "killed and wounded tens of doctors, nurses and patients."

US-led Nato forces ended their combat mission in Afghanistan last December, though a 13,000-strong residual force remains for training and counter-terrorism operations.

But there has been an escalation in air strikes by Nato forces in recent months despite the draw down.